IL_9K0Z_040

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

9K0Z|1|A|C|916

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_040 not in the Motif Atlas

Geometric match to IL_5J7L_041

Geometric discrepancy: 0.1415

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9K0Z|1|A|G|915
9K0Z|1|A|C|916
9K0Z|1|A|A|917
*
9K0Z|1|A|U|1363
9K0Z|1|A|U|1364
9K0Z|1|A|C|1365
9K0Z|1|A|C|1366
9K0Z|1|A|C|1367

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain G

Small ribosomal subunit protein uS7

Chain I

Small ribosomal subunit protein uS9