IL_9K0Z_047

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

9K0Z|1|A|C|1181, 9K0Z|1|A|A|1182

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_047 not in the Motif Atlas

Geometric match to IL_5J7L_048

Geometric discrepancy: 0.1152

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9K0Z|1|A|G|1037
9K0Z|1|A|G|1038
*
9K0Z|1|A|U|1180
9K0Z|1|A|C|1181
9K0Z|1|A|A|1182
9K0Z|1|A|U|1183
9K0Z|1|A|C|1184

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14B