IL_9K0Z_056

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_056 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1266

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9K0Z|1|A|C|1285
9K0Z|1|A|G|1286
9K0Z|1|A|G|1287
9K0Z|1|A|A|1288
9K0Z|1|A|U|1289
9K0Z|1|A|C|1290
*
9K0Z|1|A|G|1311
9K0Z|1|A|U|1312
9K0Z|1|A|G|1313
9K0Z|1|A|A|1314
9K0Z|1|A|A|1315
9K0Z|1|A|G|1316

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13