IL_9K0Z_059

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_059 not in the Motif Atlas

Geometric match to IL_8CRE_468

Geometric discrepancy: 0.0839

The information below is about IL_8CRE_468

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9K0Z|1|A|G|1388
9K0Z|1|A|U|1389
9K0Z|1|A|C|1390
*
9K0Z|1|A|G|1478
9K0Z|1|A|U|1479
9K0Z|1|A|C|1480

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain 4

mRNA fragment

Chain 7

Translation elongation factor EF-G

Chain h

Large subunit ribosomal RNA; LSU rRNA