IL_9K0Z_075

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_075 not in the Motif Atlas

Geometric match to IL_4WF9_001

Geometric discrepancy: 0.0559

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_22311.1

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

10

Unit IDs

9K0Z|1|h|G|21
9K0Z|1|h|U|22
9K0Z|1|h|G|23
9K0Z|1|h|G|24
9K0Z|1|h|A|25
9K0Z|1|h|U|26
9K0Z|1|h|G|27
*
9K0Z|1|h|C|597
9K0Z|1|h|U|598
9K0Z|1|h|G|599
9K0Z|1|h|A|600
9K0Z|1|h|A|601
9K0Z|1|h|A|602
9K0Z|1|h|C|603

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain b

Large ribosomal subunit protein bL32

Chain x

Large ribosomal subunit protein bL20

Chain z

Large ribosomal subunit protein uL22