IL_9K0Z_080

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAAGUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_080 not in the Motif Atlas

Geometric match to IL_7A0S_006

Geometric discrepancy: 0.1207

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9K0Z|1|h|G|187
9K0Z|1|h|G|188
9K0Z|1|h|A|189
9K0Z|1|h|A|190
9K0Z|1|h|G|191
9K0Z|1|h|U|192
9K0Z|1|h|G|193
*
9K0Z|1|h|C|200
9K0Z|1|h|U|201
9K0Z|1|h|C|202
9K0Z|1|h|A|203
9K0Z|1|h|G|204
9K0Z|1|h|U|205
9K0Z|1|h|A|206
9K0Z|1|h|C|207

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain Y

Large ribosomal subunit protein bL28

Chain e

Large ribosomal subunit protein bL35

Chain s

Large ribosomal subunit protein uL15