IL_9K0Z_087

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

9K0Z|1|h|G|591, 9K0Z|1|h|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_087 not in the Motif Atlas

Geometric match to IL_8P9A_243

Geometric discrepancy: 0.1251

The information below is about IL_8P9A_243

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

9K0Z|1|h|G|569
9K0Z|1|h|U|570
9K0Z|1|h|A|571
9K0Z|1|h|C|572
*
9K0Z|1|h|G|583
9K0Z|1|h|A|584
9K0Z|1|h|G|585
9K0Z|1|h|U|586
9K0Z|1|h|G|587
9K0Z|1|h|A|588
9K0Z|1|h|A|589
9K0Z|1|h|A|590
9K0Z|1|h|G|591
9K0Z|1|h|A|592
9K0Z|1|h|G|593
9K0Z|1|h|U|594
9K0Z|1|h|A|595
9K0Z|1|h|C|596

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL24

Chain U

Large ribosomal subunit protein uL23

Chain z

Large ribosomal subunit protein uL22