IL_9K0Z_094

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

9K0Z|1|h|G|916, 9K0Z|1|h|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_094 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1328

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9K0Z|1|h|G|789
9K0Z|1|h|A|790
9K0Z|1|h|A|791
9K0Z|1|h|G|792
9K0Z|1|h|C|793
*
9K0Z|1|h|G|914
9K0Z|1|h|U|915
9K0Z|1|h|G|916
9K0Z|1|h|A|917
9K0Z|1|h|U|918
9K0Z|1|h|A|919
9K0Z|1|h|G|920
9K0Z|1|h|C|921

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain k

Large ribosomal subunit protein uL4

Chain s

Large ribosomal subunit protein uL15