IL_9K0Z_107

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_107 not in the Motif Atlas

Geometric match to IL_8CRE_412

Geometric discrepancy: 0.1728

The information below is about IL_8CRE_412

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

9K0Z|1|h|G|986
9K0Z|1|h|A|987
9K0Z|1|h|U|988
*
9K0Z|1|h|A|1020
9K0Z|1|h|G|1021
9K0Z|1|h|C|1022

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain W

Large ribosomal subunit protein bL25

Chain t

Large ribosomal subunit protein uL16