IL_9K0Z_108

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_108 not in the Motif Atlas

Geometric match to IL_8CRE_028

Geometric discrepancy: 0.2604

The information below is about IL_8CRE_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9K0Z|1|h|C|991
9K0Z|1|h|C|992
9K0Z|1|h|G|993
9K0Z|1|h|A|994
9K0Z|1|h|U|995
9K0Z|1|h|G|996
*
9K0Z|1|h|C|1012
9K0Z|1|h|U|1013
9K0Z|1|h|G|1014
9K0Z|1|h|A|1015
9K0Z|1|h|C|1016
9K0Z|1|h|G|1017

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain W

Large ribosomal subunit protein bL25

Chain t

Large ribosomal subunit protein uL16