IL_9K0Z_118

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAAGACAA*UCAAG

Length

14 nucleotides

Bulged bases

9K0Z|1|h|A|1164

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_118 not in the Motif Atlas

Geometric match to IL_5J7L_284

Geometric discrepancy: 0.1827

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9K0Z|1|h|C|1161
9K0Z|1|h|G|1162
9K0Z|1|h|A|1163
9K0Z|1|h|A|1164
9K0Z|1|h|G|1165
9K0Z|1|h|A|1166
9K0Z|1|h|C|1167
9K0Z|1|h|A|1168
9K0Z|1|h|A|1169
*
9K0Z|1|h|U|1226
9K0Z|1|h|C|1227
9K0Z|1|h|A|1228
9K0Z|1|h|A|1229
9K0Z|1|h|G|1230

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain m

Large ribosomal subunit protein uL6

Chain o

Large ribosomal subunit protein uL10