IL_9K0Z_119

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

9K0Z|1|h|U|1179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_119 not in the Motif Atlas

Geometric match to IL_5D8H_002

Geometric discrepancy: 0.2275

The information below is about IL_5D8H_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9K0Z|1|h|G|1177
9K0Z|1|h|U|1178
9K0Z|1|h|U|1179
9K0Z|1|h|G|1180
*
9K0Z|1|h|C|1194
9K0Z|1|h|A|1195
9K0Z|1|h|C|1196
9K0Z|1|h|C|1197

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain W

Large ribosomal subunit protein bL25

Chain p

Large ribosomal subunit protein uL11

Chain t

Large ribosomal subunit protein uL16