IL_9K0Z_145

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAUGG*UGAG

Length

9 nucleotides

Bulged bases

9K0Z|1|h|U|1932

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_145 not in the Motif Atlas

Geometric match to IL_6DLR_005

Geometric discrepancy: 0.2722

The information below is about IL_6DLR_005

Detailed Annotation

tWW and near cWH

Broad Annotation

tWW and near cWH

Motif group

IL_45860.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

9K0Z|1|h|C|1930
9K0Z|1|h|A|1931
9K0Z|1|h|U|1932
9K0Z|1|h|G|1933
9K0Z|1|h|G|1934
*
9K0Z|1|h|U|1960
9K0Z|1|h|G|1961
9K0Z|1|h|A|1962
9K0Z|1|h|G|1963

Current chains

Chain h

23S ribosomal RNA

Nearby chains