IL_9K0Z_151

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUG*UAAAC

Length

8 nucleotides

Bulged bases

9K0Z|1|h|A|2124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_151 not in the Motif Atlas

Geometric match to IL_6CK5_011

Geometric discrepancy: 0.3704

The information below is about IL_6CK5_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.3

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

12

Unit IDs

9K0Z|1|h|G|2057
9K0Z|1|h|U|2058
9K0Z|1|h|G|2059
*
9K0Z|1|h|U|2122
9K0Z|1|h|A|2123
9K0Z|1|h|A|2124
9K0Z|1|h|A|2125
9K0Z|1|h|C|2126

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain i

Large ribosomal subunit protein uL2