IL_9K0Z_154

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGGACC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_154 not in the Motif Atlas

Geometric match to IL_5LR4_002

Geometric discrepancy: 0.2748

The information below is about IL_5LR4_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71841.1

Basepair signature

cWW-tSH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9K0Z|1|h|A|2073
9K0Z|1|h|G|2074
9K0Z|1|h|G|2075
9K0Z|1|h|A|2076
9K0Z|1|h|C|2077
9K0Z|1|h|C|2078
*
9K0Z|1|h|G|2105
9K0Z|1|h|A|2106
9K0Z|1|h|G|2107
9K0Z|1|h|A|2108
9K0Z|1|h|A|2109
9K0Z|1|h|U|2110

Current chains

Chain h

23S ribosomal RNA

Nearby chains