IL_9K0Z_169

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAA*UGUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_169 not in the Motif Atlas

Geometric match to IL_9DFE_088

Geometric discrepancy: 0.2414

The information below is about IL_9DFE_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14250.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

11

Unit IDs

9K0Z|1|h|C|2521
9K0Z|1|h|A|2522
9K0Z|1|h|A|2523
*
9K0Z|1|h|U|2541
9K0Z|1|h|G|2542
9K0Z|1|h|U|2543
9K0Z|1|h|U|2544
9K0Z|1|h|G|2545

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain l

Large ribosomal subunit protein uL5

Chain v

Large ribosomal subunit protein uL18