IL_9K0Z_175

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

9K0Z|1|h|U|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_175 not in the Motif Atlas

Geometric match to IL_4WF9_092

Geometric discrepancy: 0.1019

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

9K0Z|1|h|A|2683
9K0Z|1|h|U|2684
9K0Z|1|h|C|2685
*
9K0Z|1|h|G|2713
9K0Z|1|h|G|2714
9K0Z|1|h|U|2715
9K0Z|1|h|U|2716
9K0Z|1|h|U|2717

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein bL37

Chain t

Large ribosomal subunit protein uL16