IL_9K0Z_179

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9K0Z|1|h|G|2800, 9K0Z|1|h|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_179 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.1012

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9K0Z|1|h|C|2734
9K0Z|1|h|U|2735
9K0Z|1|h|C|2736
*
9K0Z|1|h|G|2798
9K0Z|1|h|C|2799
9K0Z|1|h|G|2800
9K0Z|1|h|A|2801
9K0Z|1|h|G|2802

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain b

Large ribosomal subunit protein bL32

Chain j

Large ribosomal subunit protein uL3