IL_9K0Z_183

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUGAG*CAAGACCAG

Length

14 nucleotides

Bulged bases

9K0Z|1|h|C|3004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_183 not in the Motif Atlas

Geometric match to IL_9DFE_101

Geometric discrepancy: 0.1496

The information below is about IL_9DFE_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9K0Z|1|h|U|2860
9K0Z|1|h|U|2861
9K0Z|1|h|G|2862
9K0Z|1|h|A|2863
9K0Z|1|h|G|2864
*
9K0Z|1|h|C|2998
9K0Z|1|h|A|2999
9K0Z|1|h|A|3000
9K0Z|1|h|G|3001
9K0Z|1|h|A|3002
9K0Z|1|h|C|3003
9K0Z|1|h|C|3004
9K0Z|1|h|A|3005
9K0Z|1|h|G|3006

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain j

Large ribosomal subunit protein uL3

Chain q

Large ribosomal subunit protein uL13