IL_9K0Z_188

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAUAAC*GGAAAC

Length

12 nucleotides

Bulged bases

9K0Z|1|h|A|2989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_188 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.0912

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9K0Z|1|h|G|2961
9K0Z|1|h|A|2962
9K0Z|1|h|U|2963
9K0Z|1|h|A|2964
9K0Z|1|h|A|2965
9K0Z|1|h|C|2966
*
9K0Z|1|h|G|2986
9K0Z|1|h|G|2987
9K0Z|1|h|A|2988
9K0Z|1|h|A|2989
9K0Z|1|h|A|2990
9K0Z|1|h|C|2991

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L36

Chain m

Large ribosomal subunit protein uL6

Chain q

Large ribosomal subunit protein uL13