IL_9K0Z_189

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAC*GCAC

Length

7 nucleotides

Bulged bases

9K0Z|1|h|A|3100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K0Z_189 not in the Motif Atlas

Geometric match to IL_7DLZ_003

Geometric discrepancy: 0.1756

The information below is about IL_7DLZ_003

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9K0Z|1|h|G|3059
9K0Z|1|h|A|3060
9K0Z|1|h|C|3061
*
9K0Z|1|h|G|3098
9K0Z|1|h|C|3099
9K0Z|1|h|A|3100
9K0Z|1|h|C|3101

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain u

Large ribosomal subunit protein bL17

Chain w

50S ribosomal protein L19