IL_9K10_004

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGAG*CGUUGAUC

Length

13 nucleotides

Bulged bases

9K10|1|A|U|98

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_004 not in the Motif Atlas

Geometric match to IL_6UFM_001

Geometric discrepancy: 0.1312

The information below is about IL_6UFM_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

9K10|1|A|G|78
9K10|1|A|G|79
9K10|1|A|G|80
9K10|1|A|A|81
9K10|1|A|G|82
*
9K10|1|A|C|95
9K10|1|A|G|96
9K10|1|A|U|97
9K10|1|A|U|98
9K10|1|A|G|99
9K10|1|A|A|100
9K10|1|A|U|101
9K10|1|A|C|102

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein uL24

Chain Z

50S ribosomal protein L29