IL_9K10_020

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

9K10|1|A|G|916, 9K10|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_020 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1348

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9K10|1|A|G|789
9K10|1|A|A|790
9K10|1|A|A|791
9K10|1|A|G|792
9K10|1|A|C|793
*
9K10|1|A|G|914
9K10|1|A|U|915
9K10|1|A|G|916
9K10|1|A|A|917
9K10|1|A|U|918
9K10|1|A|A|919
9K10|1|A|G|920
9K10|1|A|C|921

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15