IL_9K10_030
3D structure
- PDB id
- 9K10 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 50S ribosome subunit complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9K10_030 not in the Motif Atlas
- Geometric match to IL_5J7L_270
- Geometric discrepancy: 0.1151
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9K10|1|A|G|971
9K10|1|A|A|972
9K10|1|A|G|973
9K10|1|A|G|974
9K10|1|A|U|975
9K10|1|A|A|976
9K10|1|A|G|977
*
9K10|1|A|C|1030
9K10|1|A|G|1031
9K10|1|A|A|1032
9K10|1|A|A|1033
9K10|1|A|U|1034
9K10|1|A|G|1035
9K10|1|A|C|1036
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain N
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L25
- Chain X
- 50S ribosomal protein L27
- Chain a
- 50S ribosomal protein L30
Coloring options: