IL_9K10_039

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCCCUAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_039 not in the Motif Atlas

Geometric match to IL_9DFE_036

Geometric discrepancy: 0.1195

The information below is about IL_9DFE_036

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9K10|1|A|C|1122
9K10|1|A|C|1123
9K10|1|A|C|1124
9K10|1|A|C|1125
9K10|1|A|U|1126
9K10|1|A|A|1127
9K10|1|A|A|1128
9K10|1|A|G|1129
*
9K10|1|A|C|1269
9K10|1|A|G|1270

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L13

Chain R

50S ribosomal protein L20