IL_9K10_041

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

9K10|1|A|C|1260, 9K10|1|A|A|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_041 not in the Motif Atlas

Geometric match to IL_4V9F_040

Geometric discrepancy: 0.0877

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9K10|1|A|C|1136
9K10|1|A|U|1137
9K10|1|A|A|1138
9K10|1|A|A|1139
9K10|1|A|G|1140
9K10|1|A|U|1141
9K10|1|A|G|1142
*
9K10|1|A|C|1258
9K10|1|A|U|1259
9K10|1|A|C|1260
9K10|1|A|A|1261
9K10|1|A|A|1262
9K10|1|A|G|1263

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36