IL_9K10_045

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

9K10|1|A|U|1179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_045 not in the Motif Atlas

Geometric match to IL_5D8H_002

Geometric discrepancy: 0.204

The information below is about IL_5D8H_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9K10|1|A|G|1177
9K10|1|A|U|1178
9K10|1|A|U|1179
9K10|1|A|G|1180
*
9K10|1|A|C|1194
9K10|1|A|A|1195
9K10|1|A|C|1196
9K10|1|A|C|1197

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain N

50S ribosomal protein L16

Chain W

50S ribosomal protein L25