IL_9K10_058

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

9K10|1|A|U|1641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_058 not in the Motif Atlas

Geometric match to IL_9DFE_056

Geometric discrepancy: 0.2063

The information below is about IL_9DFE_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9K10|1|A|C|1638
9K10|1|A|G|1639
9K10|1|A|A|1640
9K10|1|A|U|1641
9K10|1|A|G|1642
*
9K10|1|A|C|1797
9K10|1|A|U|1798
9K10|1|A|A|1799
9K10|1|A|G|1800

Current chains

Chain A

23S ribosomal RNA

Nearby chains