IL_9K10_059

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAA*UAUGC

Length

9 nucleotides

Bulged bases

9K10|1|A|U|1779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_059 not in the Motif Atlas

Geometric match to IL_6DLR_005

Geometric discrepancy: 0.3084

The information below is about IL_6DLR_005

Detailed Annotation

tWW and near cWH

Broad Annotation

tWW and near cWH

Motif group

IL_45860.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

9K10|1|A|G|1653
9K10|1|A|G|1654
9K10|1|A|A|1655
9K10|1|A|A|1656
*
9K10|1|A|U|1777
9K10|1|A|A|1778
9K10|1|A|U|1779
9K10|1|A|G|1780
9K10|1|A|C|1781

Current chains

Chain A

23S ribosomal RNA

Nearby chains