IL_9K10_102

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGAG*CAAGACCAG

Length

14 nucleotides

Bulged bases

9K10|1|A|C|3004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_102 not in the Motif Atlas

Geometric match to IL_9DFE_101

Geometric discrepancy: 0.1397

The information below is about IL_9DFE_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9K10|1|A|U|2860
9K10|1|A|U|2861
9K10|1|A|G|2862
9K10|1|A|A|2863
9K10|1|A|G|2864
*
9K10|1|A|C|2998
9K10|1|A|A|2999
9K10|1|A|A|3000
9K10|1|A|G|3001
9K10|1|A|A|3002
9K10|1|A|C|3003
9K10|1|A|C|3004
9K10|1|A|A|3005
9K10|1|A|G|3006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13