IL_9K10_103

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_103 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.0982

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9K10|1|A|C|2876
9K10|1|A|U|2877
9K10|1|A|A|2878
9K10|1|A|G|2879
9K10|1|A|U|2880
9K10|1|A|A|2881
9K10|1|A|C|2882
*
9K10|1|A|G|2887
9K10|1|A|G|2888
9K10|1|A|A|2889
9K10|1|A|C|2890
9K10|1|A|C|2891
9K10|1|A|G|2892

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

Translation elongation factor EF-G

Chain G

50S ribosomal protein L6