IL_9K10_110

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGGAAG*UGCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K10_110 not in the Motif Atlas

Geometric match to IL_4WF9_108

Geometric discrepancy: 0.1487

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

9K10|1|A|U|3068
9K10|1|A|G|3069
9K10|1|A|G|3070
9K10|1|A|A|3071
9K10|1|A|A|3072
9K10|1|A|G|3073
*
9K10|1|A|U|3086
9K10|1|A|G|3087
9K10|1|A|C|3088
9K10|1|A|A|3089
9K10|1|A|G|3090

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain Q

50S ribosomal protein L19