IL_9K10_116
3D structure
- PDB id
- 9K10 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 50S ribosome subunit complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAUGAUAC*GAAAAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9K10_116 not in the Motif Atlas
- Geometric match to IL_5J7L_359
- Geometric discrepancy: 0.1052
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9K10|1|B|C|72
9K10|1|B|G|73
9K10|1|B|A|74
9K10|1|B|U|75
9K10|1|B|G|76
9K10|1|B|A|77
9K10|1|B|U|78
9K10|1|B|A|79
9K10|1|B|C|80
*
9K10|1|B|G|95
9K10|1|B|A|96
9K10|1|B|A|97
9K10|1|B|A|98
9K10|1|B|A|99
9K10|1|B|G|100
9K10|1|B|U|101
9K10|1|B|A|102
9K10|1|B|G|103
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L25
Coloring options: