IL_9K2Z_008

3D structure

PDB id

9K2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HfmIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AAAG*CU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K2Z_008 not in the Motif Atlas

Geometric match to IL_9E6Q_071

Geometric discrepancy: 0.3058

The information below is about IL_9E6Q_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

9K2Z|1|B|A|160
9K2Z|1|B|A|161
9K2Z|1|B|A|162
9K2Z|1|B|G|163
*
9K2Z|1|B|C|268
9K2Z|1|B|U|269

Current chains

Chain B

Omega RNA

Nearby chains