IL_9K2Z_010
3D structure
- PDB id
- 9K2Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HfmIscB-omega RNA-target DNA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- GCCAAU*AGAAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9K2Z_010 not in the Motif Atlas
- Geometric match to IL_4QLM_002
- Geometric discrepancy: 0.2572
- The information below is about IL_4QLM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74322.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
9K2Z|1|B|G|213
9K2Z|1|B|C|214
9K2Z|1|B|C|215
9K2Z|1|B|A|216
9K2Z|1|B|A|217
9K2Z|1|B|U|218
*
9K2Z|1|B|A|254
9K2Z|1|B|G|255
9K2Z|1|B|A|256
9K2Z|1|B|A|257
9K2Z|1|B|A|258
9K2Z|1|B|C|259
Current chains
- Chain B
- Omega RNA
Nearby chains
- Chain C
- Target DNA strand
Coloring options: