IL_9K30_001

3D structure

PDB id

9K30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UUC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K30_001 not in the Motif Atlas

Geometric match to IL_8B0X_145

Geometric discrepancy: 0.0872

The information below is about IL_8B0X_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

9K30|1|B|U|3
9K30|1|B|U|4
9K30|1|B|C|5
*
9K30|1|B|G|152
9K30|1|B|U|153
9K30|1|B|G|154

Current chains

Chain B

Omega RNA

Nearby chains

Chain A

TbaIscB