IL_9K30_007

3D structure

PDB id

9K30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UCGC*GAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K30_007 not in the Motif Atlas

Geometric match to IL_8B0X_006

Geometric discrepancy: 0.3961

The information below is about IL_8B0X_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9K30|1|B|U|281
9K30|1|B|C|282
9K30|1|B|G|283
9K30|1|B|C|284
*
9K30|1|B|G|294
9K30|1|B|A|295
9K30|1|B|A|296

Current chains

Chain B

Omega RNA

Nearby chains