IL_9K30_008

3D structure

PDB id

9K30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

9K30|1|B|A|398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K30_008 not in the Motif Atlas

Geometric match to IL_4PHY_002

Geometric discrepancy: 0.1589

The information below is about IL_4PHY_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9K30|1|B|C|370
9K30|1|B|C|371
*
9K30|1|B|G|397
9K30|1|B|A|398
9K30|1|B|G|399

Current chains

Chain B

Omega RNA

Nearby chains

Chain A

TbaIscB