IL_9K31_001

3D structure

PDB id

9K31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the YnpsCas9-guide RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

9K31|1|B|A|118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K31_001 not in the Motif Atlas

Geometric match to IL_7JJU_004

Geometric discrepancy: 0.2749

The information below is about IL_7JJU_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9K31|1|B|U|10
9K31|1|B|C|11
*
9K31|1|B|G|117
9K31|1|B|A|118
9K31|1|B|A|119

Current chains

Chain B

Guide RNA

Nearby chains

Chain A

YnpsCas9