IL_9K31_005

3D structure

PDB id

9K31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the YnpsCas9-guide RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGAAAC*GCCAC

Length

11 nucleotides

Bulged bases

9K31|1|B|A|166, 9K31|1|B|A|167, 9K31|1|B|C|191

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K31|1|B|G|164
9K31|1|B|G|165
9K31|1|B|A|166
9K31|1|B|A|167
9K31|1|B|A|168
9K31|1|B|C|169
*
9K31|1|B|G|189
9K31|1|B|C|190
9K31|1|B|C|191
9K31|1|B|A|192
9K31|1|B|C|193

Current chains

Chain B

Guide RNA

Nearby chains

Chain A

YnpsCas9