IL_9K31_006

3D structure

PDB id

9K31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the YnpsCas9-guide RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UG*CGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K31_006 not in the Motif Atlas

Geometric match to IL_8OI5_104

Geometric discrepancy: 0.2271

The information below is about IL_8OI5_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46637.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

21

Unit IDs

9K31|1|B|U|173
9K31|1|B|G|174
*
9K31|1|B|C|183
9K31|1|B|G|184
9K31|1|B|G|185

Current chains

Chain B

Guide RNA

Nearby chains