IL_9K31_010

3D structure

PDB id

9K31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the YnpsCas9-guide RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGC*GAGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K31_010 not in the Motif Atlas

Geometric match to IL_4PDB_001

Geometric discrepancy: 0.3132

The information below is about IL_4PDB_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_42776.1

Basepair signature

cWW-L-R-cSH-cWW-L

Number of instances in this motif group

3

Unit IDs

9K31|1|B|C|295
9K31|1|B|G|296
9K31|1|B|C|297
*
9K31|1|B|G|321
9K31|1|B|A|322
9K31|1|B|G|323
9K31|1|B|A|324
9K31|1|B|G|325

Current chains

Chain B

Guide RNA

Nearby chains