IL_9K9J_002

3D structure

PDB id

9K9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of linear intron of Anabaena tRNA(Leu) precursor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GAAAC*GCAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K9J_002 not in the Motif Atlas

Geometric match to IL_9H3G_004

Geometric discrepancy: 0.1854

The information below is about IL_9H3G_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9K9J|1|A|G|89
9K9J|1|A|A|90
9K9J|1|A|A|91
9K9J|1|A|A|92
9K9J|1|A|C|93
*
9K9J|1|A|G|115
9K9J|1|A|C|116
9K9J|1|A|A|117
9K9J|1|A|A|118
9K9J|1|A|U|119

Current chains

Chain A

RNA (251-MER)

Nearby chains