IL_9K9J_008

3D structure

PDB id

9K9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of linear intron of Anabaena tRNA(Leu) precursor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K9J_008 not in the Motif Atlas

Geometric match to IL_6DTD_003

Geometric discrepancy: 0.154

The information below is about IL_6DTD_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

9K9J|1|A|G|188
9K9J|1|A|A|189
9K9J|1|A|G|190
*
9K9J|1|A|C|238
9K9J|1|A|C|239

Current chains

Chain A

RNA (251-MER)

Nearby chains