IL_9K9J_009

3D structure

PDB id

9K9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of linear intron of Anabaena tRNA(Leu) precursor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CGACGGGAGCU*AAAGAGAG

Length

19 nucleotides

Bulged bases

9K9J|1|A|G|232, 9K9J|1|A|A|233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9K9J_009 not in the Motif Atlas

Geometric match to IL_1U6B_008

Geometric discrepancy: 0.2134

The information below is about IL_1U6B_008

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

IL_43467.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

9K9J|1|A|C|194
9K9J|1|A|G|195
9K9J|1|A|A|196
9K9J|1|A|C|197
9K9J|1|A|G|198
9K9J|1|A|G|199
9K9J|1|A|G|200
9K9J|1|A|A|201
9K9J|1|A|G|202
9K9J|1|A|C|203
9K9J|1|A|U|204
*
9K9J|1|A|A|227
9K9J|1|A|A|228
9K9J|1|A|A|229
9K9J|1|A|G|230
9K9J|1|A|A|231
9K9J|1|A|G|232
9K9J|1|A|A|233
9K9J|1|A|G|234

Current chains

Chain A

RNA (251-MER)

Nearby chains