IL_9KDV_022

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AUUCAAC*GCGCACUU

Length

15 nucleotides

Bulged bases

9KDV|1|L5|U|466, 9KDV|1|L5|C|693, 9KDV|1|L5|C|695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|A|465
9KDV|1|L5|U|466
9KDV|1|L5|U|467
9KDV|1|L5|C|468
9KDV|1|L5|A|469
9KDV|1|L5|A|470
9KDV|1|L5|C|471
*
9KDV|1|L5|G|690
9KDV|1|L5|C|691
9KDV|1|L5|G|692
9KDV|1|L5|C|693
9KDV|1|L5|A|694
9KDV|1|L5|C|695
9KDV|1|L5|U|696
9KDV|1|L5|U|697

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Lr

Large ribosomal subunit protein eL28