IL_9KDV_068
3D structure
- PDB id
- 9KDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 9KDV|1|L5|U|1733, 9KDV|1|L5|C|1734, 9KDV|1|L5|G|1858, 9KDV|1|L5|A|1860
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDV|1|L5|C|1729
9KDV|1|L5|U|1730
9KDV|1|L5|C|1731
9KDV|1|L5|A|1732
9KDV|1|L5|U|1733
9KDV|1|L5|C|1734
9KDV|1|L5|A|1735
9KDV|1|L5|G|1736
*
9KDV|1|L5|C|1856
9KDV|1|L5|U|1857
9KDV|1|L5|G|1858
9KDV|1|L5|G|1859
9KDV|1|L5|A|1860
9KDV|1|L5|G|1861
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LH
- Large ribosomal subunit protein uL6
- Chain LM
- Large ribosomal subunit protein eL14
- Chain LO
- Large ribosomal subunit protein uL13
- Chain LS
- Large ribosomal subunit protein eL20
- Chain Lm
- Ubiquitin-ribosomal protein eL40 fusion protein
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