IL_9KDV_081

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

9KDV|1|L5|G|2301, 9KDV|1|L5|U|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|G|2299
9KDV|1|L5|A|2300
9KDV|1|L5|G|2301
9KDV|1|L5|U|2302
9KDV|1|L5|G|2303
9KDV|1|L5|G|2304
*
9KDV|1|L5|C|2526
9KDV|1|L5|G|2527
9KDV|1|L5|C|2528

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lk

Large ribosomal subunit protein eL38