IL_9KDV_088
3D structure
- PDB id
- 9KDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 9KDV|1|L5|U|2415, 9KDV|1|L5|A|2428
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDV|1|L5|U|2410
9KDV|1|L5|G|2411
9KDV|1|L5|G|2412
9KDV|1|L5|A|2413
9KDV|1|L5|A|2414
9KDV|1|L5|U|2415
9KDV|1|L5|G|2416
*
9KDV|1|L5|C|2426
9KDV|1|L5|G|2427
9KDV|1|L5|A|2428
9KDV|1|L5|G|2429
9KDV|1|L5|A|2430
9KDV|1|L5|G|2431
9KDV|1|L5|A|2432
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LR
- Large ribosomal subunit protein eL19
- Chain LZ
- Large ribosomal subunit protein eL27
- Chain Lc
- Large ribosomal subunit protein eL30
- Chain Lg
- Large ribosomal subunit protein eL34
- Chain Lp
- Large ribosomal subunit protein eL43
- Chain SN
- Small ribosomal subunit protein uS15
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