IL_9KDV_126

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|C|4119
9KDV|1|L5|A|4120
9KDV|1|L5|U|4121
9KDV|1|L5|U|4122
9KDV|1|L5|G|4123
*
9KDV|1|L5|C|4138
9KDV|1|L5|C|4139
9KDV|1|L5|A|4140
9KDV|1|L5|A|4141
9KDV|1|L5|G|4142
9KDV|1|L5|C|4143
9KDV|1|L5|G|4144

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LH

Large ribosomal subunit protein uL6

Chain LO

Large ribosomal subunit protein uL13

Chain LV

Large ribosomal subunit protein uL14

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein